I like that they increased the amount of fragments you can buy with the in-game currencies. For example, Sage Naruto went from 2 fragments per day to 5 fragments per day.
But their order/sorting system doesn't make sense (where with the collection scrolls it was ordered by story arc), for ninja you could get fragments from by doing elite instances the collection scrolls had all of their instances in one place (not anymore), and now if you want to see how many fragments you have on a ninja, you have to exit the recruit shop, open up the ninja menu, go to the training tab, find your ninja and scroll to the upgrade stars, whereas in the collection scrolls, it told you the number of fragments and the number of stars on the ninja itself.

OASIS, put the current number of fragments and stars of your ninja back up! It's really bad you got rid of that!